Case Study: Visualization of annotated DNA sequences

Peeters, Tim; Fiers, Mark; Wetering, Huub van de; Nap, Jan-Peter; Wijk, Jarke J. van

Case Study: Visualization of annotated DNA sequences

Files

109-114.pdf (1.17 MB)

Date

2004

Authors

Peeters, Tim
Fiers, Mark
Wetering, Huub van de
Nap, Jan-Peter
Wijk, Jarke J. van

Publisher

The Eurographics Association

Abstract

DNA sequences and their annotations form ever expanding data sets. Proper explorations of such data sets require new tools for visualization and analysis. In this case study, we have defined the requirements for a visualization tool for annotated DNA sequences.We have implemented these requirements in a new and flexible tool for browsing and comparing annotated DNA sequences interactively and in real-time. The use of standard information visualization techniques, such as linked windows, perspective walls, and smooth interaction, enables genome researchers to obtain better insight in large DNA data sets in an effective, efficient, and attractive way.

        @inproceedings{:10.2312/VisSym/VisSym04/109-114
,
booktitle = {Eurographics / IEEE VGTC Symposium on Visualization
},
editor = {Oliver Deussen and Charles Hansen and Daniel Keim and Dietmar Saupe
},
title = {{Case Study: Visualization of annotated DNA sequences
}},
author = {Peeters, Tim and 
Fiers, Mark and 
Wetering, Huub van de and 
Nap, Jan-Peter and 
Wijk, Jarke J. van
},
year = {2004
},
publisher = {The Eurographics Association
},
ISSN = {1727-5296
},
ISBN = {3-905673-07-X
},
DOI = {/10.2312/VisSym/VisSym04/109-114
}
}